Approximate Minor Allele Frequecies
GenBank accession no. Location of target SNP dbSNP Accession Orientation(g) Linkage Group Linkage map postion (cM)b Chr. No. Chr. Position(a) Genomic region identifier SNP alias(s) No. Traces at NCBI SNPs in STSs STS coverage (bp) USMARC Beef BARC Dairy USMARC Dairy Univ. Aberta/Moore Beef Target SNP and Flanking Sequence(f) Date Created Date Modified
DQ381153 1330 rs29012842 rev BTA_1 7 chr_1 (c) - SCAFFOLD135069_21121 - 856 21 1383 0.49 0.448 nd (d) 0.406 gaattcgctaatgagaagatccaagcagatccacttgtgatctgagtgttcattgctgcaccgcctctccaagctcccaagggcatctctctacgtaata[G/T]taatgcctggccaggtcccatccattctgacagacaaaggacaRRcgctactttacatttatgtgcagcctctttatttcattatactgagtgccttctg SEP-18-2006
DQ451555 2281 rs29010795 fwd BTA_1 34 chr_1 - SCAFFOLD155476_15944 - 1191 14 1005 0.432 0.416 nd 0.422 ctcttctttttaacatcaaatcttaaattattttttaatcttttattatgcttcatatttgaatgataagaYacctgtaattttaatttcaggactattt[A/G]ttggataccaagactaaattcttccattgagtgtttctcaattatgaaggcacagactaagtacttggaaacatggttaaaaatgaaKattctcattcca SEP-18-2006
DQ404150 2655 rs29012530 rev BTA_1 70 chr_1 - SCAFFOLD130001_59457 - 1071 4 1053 0.448 0.453 nd 0.4865 tagaaactttaggaatcctttcatcccttagtaaattactgcttaaagttctaaaccaatcaacaattgtttttcaaaaagataaatgcaagaaaaaaat[G/T]cttcctaattgtctcctatgcctttgagtgaaagtggctttacttgttttagaagagctcattaaggcttgaatagttatcaRaattattctgaaatgtg SEP-18-2006
DQ404149 2834 - n/a BTA_1 115 chr_1 - BES6_Contig246_498 - 996 9 1068 0.4375 0.417 nd 0.396 Ycagtagtgacttccagaattttcctggttggcaggagcagattcttaaaggggctcataagataaagcttttgcttctctcagaatttcagcatttctt[C/T]gagattactccatcccattttcaaggagttctatgccccatctctggccctcccaggacatatcttcaaggttaatgtttaagtgttaattaagcctagc SEP-18-2006
AY761135 1014 rs29003723 rev BTA_1 138 chr_1 - 36937 - 1262 10 798 0.364 nd 0.408 nd ccaattgttaaagcaggacttgtggcctctttctctgtacttctttattacgctcctctgaagaaggaaaaaYRatttctcttattcatgagRaggtaag[A/T]gtcttgggtcccctgaacctcctagctccaStgMaatgattctcaaactttaattRcaagagaataaggagggctaagtaaaacacagactcttgggccc SEP-18-2006
DQ404151 951 rs29019282 fwd BTA_1 154 chr_1 100281322 SCAFFOLD197372_885 - 1026 13 1030 0.49 0.469 nd 0.3795 aacgtcaccagcaagaccttgatttagttttaggtaattttttctctcatctttccttttctccatgatactgctgaattactgctcccatgatacgcac[C/T]ccccRccccctacaatgttgggcgattgttcctccgggtcctttatgtgtgacggttcttggatgcagacaacagaaactcaggctcggcaaatataggc SEP-18-2006
DQ404152 1555 rs29022245 fwd BTA_2 9 chr_2 1101511 SCAFFOLD265863_5396 - 987 13 1116 0.495 0.5 nd 0.4295 gggaagcccctRctgaatcatgctctcttctaaatcaggctttgaaagcMaagagcagctggtttcctatacctgtgccatYgggcccYtccttcccctc[A/G]ccccctctcctagggtcatagggcacatcctgggctgtctgcatatcttctcccctacatcccctccacctggcctctaatgtccacccacctttctaag SEP-18-2006
AY776154 1982 - n/a BTA_2 51 chr_2 18895102 3250 (LRP2) MBS042-1 626 13 1263 0.398 nd 0.383 nd atctggagtgcgtttcaaaatggaacagataaaaaactagtaagtacataagtacatatctactggcctttgatctgactagttccccagtctcaggtct[A/G]tttgctgttaatcaccagtgagagaaggtcctaccctatcttaagtggttctcatRtctccctctgggccatccatacttaaaaagccctggatgttcct SEP-18-2006
AY841151 6724 rs29003466 fwd BTA_2 61 chr_2 - 33850 - 1335 6 1079 0.385 nd 0.392 nd accccattactgctttcaaggaatctatgtcatttcaggataagaaaataaagtaataaggcttgccttccaaagatggttcatggaattcaggtKtgtt[G/T]ttctgctatcattaatcaactgtgagggcgtgtagtcaatatttctcatttttgtttaggaaatgaataatagaagctaacagaaaatataatcagaata SEP-18-2006
DQ422949 3610 rs29011466 fwd BTA_2 73 chr_2 41344688 SCAFFOLD1676_5172 - 1237 12 1061 0.484 0.49 nd 0.484 agccctggtttggaaccgcttggacagaggctaaggaggaagcgtcctcatcagcctcgtcatgagaatccgtgtcataaacaaatgccttgtggggatc[C/T]gtgcaggggctccttgtgtctgtgggtttgcagggtggatattccttcaggctgttactattaattcctggagaatagattccttcattggagttcatgc SEP-18-2006
DQ786757 7466 rs29019900 fwd BTA_2 105 chr_2 - SCAFFOLD210095_19074 - 1089 25 1229 0.422 0.48 nd 0.487 ttagggagcaggtgaaattgaaccgggctgcagttcatcaaacgaaataaaaacttgctgccagggaaggttctgatgttgtgtgatattgcataggca[A/G]ttataaacaactgtgtctgatagYagttatccactgatatgtgcctcgtgccctacttccttactaYKcRaaatgtgattggaaggccaggtgatgctggg SEP-18-2006
DQ422950 2295 rs29012306 fwd BTA_3 13 chr_3 3773688 SCAFFOLD125136_12607 - 1019 7 1395 0.479 0.474 nd 0.498 taatgtgccctgtcactcccgcctagaagttaaagtgggaacagaggatagtacacaggtttttccaaacttacttgtttccaacacctcttttcctccc[A/C]aaaccactgttccaaggcacatattttgggaaatactgctgcaggatattaaagaaagagttcatttcatagagataggtaatgaaggacactaactctt SEP-18-2006
DQ647187 2869 rs29010510 fwd BTA_3 24 chr_3 - SCAFFOLD155264_15493 - 842 21 1003 0.495 0.333 nd 0.477 gggRaaaaagagacctatttccgcctggtttcgaRccggRgacYtttcacRYgtgaggcaaacgtgataaccactacacYacggaaaggcRacagtcgct[A/G]ccactgagcMctgtatccaggaaaacccaaggttcagccgccactatccaagccaccaacttttaacattcatgcagaaaccttggagccccacgctctc SEP-18-2006 JAN-28-2007
AY842472 1027 rs29001941 rev BTA_3 52 chr_3 - 33561 - 1055 14 993 0.369 nd 0.35 nd acagtttgcaggStggggcctgttggatttgaatctggagtctattaattactaattgtatatcttgctgctcagatgtctagagcacctgtttccatat[C/G]tgtaaaacYgagttgggagctgagactgtgactgaggagggaaggcagRagactattgctgctccgttcctccctacctctgacagctgctgggctccct SEP-18-2006
AY842474 1201 rs29003226 fwd BTA_3 57 chr_3 42803722 35286 - 1183 12 981 0.353 nd 0.366 nd ctgagcctctgaaattaaaaactctggaagatataagggaaaacaagatagtctttgctcttcaatttaggtcaaggtacaattggaccatgaYtgagaa[C/G]tttagaggagggagagacaatatccatgtgcagtggtgaagctgcagcaggtgaaatgcaaagcagacYttaaaagagaaaaattccaatttcaacggtc SEP-18-2006
AY842473 1511 rs29001956 rev BTA_3 67 chr_3 - 33868 - 1337 8 937 0.369 nd 0.343 nd tgttgattgcgaggggaagctgaagaatcactgtggacctcactgagtttcagagagggccagaactcttctgtccacaaggtctggctccatcctggtg[A/G]ggtgggcagagaaccatgagttcttgagtagctccaagacctatggcatcaagtggcatgcttgctacctcctagctaactttattaatgttgggtcYtc SEP-18-2006
DQ435443 2397 rs29010802 fwd BTA_3 80 chr_3 43522962 SCAFFOLD155534_16941 - 1086 11 1460 0.375 0.48 nd 0.4175 gttctactttagtttttcttttttgttacagaacatatttttttaaaagtgctatcatgtgccttgaaggttgtagcagaaggcgaaataattcataatt[C/A]ttttagctaggttggtgaccactagatagtaggctgctttaaagtctgtgttttatttacttgtttgtatattgaccgactgaYtgacttcagtttctgg SEP-18-2006
DQ489377 2264 rs29026932 fwd BTA_3 106 chr_3 69707052 SCAFFOLD240852_12041 - 1226 22 1003 0.453 0.429 nd 0.474 tggggctaatctacYaatgggcatttattgggcatctgctgYgtgcctggctctgtacagcaggagaaatagcaatattgaacctttagttgtggtttgt[C/T]tgatgcaggtcatcaYggccacgtgaggtcggcacagggcagtgaggtcRgccacccagcttccatttccaaactctgccacttttccttctcttcctcc SEP-18-2006
DQ839235 12952 rs29012691 rev BTA_3 128 chr_3 - SCAFFOLD131034_8070 - 736 23 1169 0.5 0.49 nd 0.437 agctttcattatcactcatctccttcaccaagaccactgtccttgccaaggactcgtttcgtgtggaggctttgaaaggctgtcattcacaacaaaaccK[A/C]gatcattatctagttttttaactctcattttcttagcacttgaaaatgctttaaagccctcaatattttcaggRcttcatRggcacatgaatgtattaat SEP-18-2006
DQ647186 2589 rs29014143 rev BTA_4 26 chr_4 - SCAFFOLD116028_6113 - 797 16 1016 0.448 0.484 nd 0.506 ggcaggcaaattgtttaccagctgagcttcctgggaagcccctcctatacttacccatgtatgtgtagctggctagggatctgactgcttcctcacagct[A/G]tgtcttttctcataaactttcccttctccctgtcttcctcagtgtcctaYRgagaactgctgggttgcttcctttcatgagctaatggtgcacttttaaa SEP-18-2006
AY842475 1726 rs29002127 fwd BTA_4 28 chr_4 5732358 39147(SCIN) - 1270 6 1204 0.347 nd 0.404 nd gattgtggtagaagaagggagtgaaccatcagagcttacaaaggtattatgagttgtgtgggtttttaaaagcttgcatctctaagctgtatgtgtgagc[A/G]tgtgWgttagatttaataacatctctgataaagctcagattaggtaagaggatgtatcagagttttctaagtcatggtcctaggagaatagcgtatcacg SEP-18-2006
DQ485413 6787 - n/a BTA_4 97 chr_4 49570573 BES6_Contig314_677 - 1188 15 1030 0.49 0.432 nd 0.453 gaggcctacaaggacccaggtgtttgggacacatacagtacacaccagtgagccagaacctgagaaacctgggctgtgctagggaaacctccagagttcc[C/T]acttgtgagtcYgtctggaggtttgtctctctctcRcctttggcaagcttgtcccttagcaatgtccacccacaWacacatgcagccagtcactggcaat SEP-18-2006
DQ647188 5527 rs29011099 rev BTA_4 122 chr_4 - SCAFFOLD160853_1270 - 1521 6 808 0.464 0.38 nd 0.344 ctttactatgacgattaccagaccgagcagaaaagcacgaagcacagaactagaacaggacctccccgagcgttaacgagagcaaagcgcagcgtgccca[C/T]ctggtcRatacaggcagtgacacggactctgcctcaacctccaaggaccccaacacacagctcttctcaaaatcaacaccRaggagatggaatcttaaaa SEP-18-2006
DQ470475 3303 - n/a BTA_5 24 chr_5 6474838 BES7_Contig521_4435 - 1149 12 985 0.448 0.396 nd 0.469 gcttaacaaaattaccaccttcaaagagaagaataRttcttgatagcattcatagtaatgcttccatttctctgtggaaacataagcgggaagcatgaag[A/T]agacaggggagagagtctcaggaaaagcaactggcttgctttcattcctgtgttcactctgccttatttctcatgtattctRtcttaaaatagcaacaca SEP-18-2006
DQ500958 4279 - n/a BTA_5 48 chr_5 - BES11_Contig416_1160 - 1104 28 1019 0.448 0.5 nd 0.411 acactgcYggtcgcagccgggcSgaggctgagtcctggtacYgcagcaaggtgagtggtccagcactcccttcccagaacagggatgctaaaatctgaaa[A/G]cattagcagagtggggagggatgctgaaaaagcattgacctttgtctgggtgggcaagggaagggcgggcagctctcRggatggggtgcagatgtgcaWg SEP-18-2006
DQ647189 3514 rs29012226 fwd BTA_5 86 chr_5 - SCAFFOLD122517_7619 - 1188 16 1132 0.458 0.339 nd 0.378 tgaagcaactaaRcatgcatgcatggtggtggttttttagcatctgaaaaRctcaggcatgagctactattatctgggtacttctgagagcatgtgggag[C/T]SggRtctgtcctgaaaaggcctcactcggttacatcagcagtgagtcctgctYggttacatcagttgtgagatcccaggtcctgtccacattccagcacc SEP-18-2006
DQ468384 191702 rs29003967 rev BTA_5 122 chr_5 - 5597 (BV105351-426-M) MBS043-1 1382 19 861 0.427 0.458 nd nd ggccagccaagcacatgcgtttctcccagagcYgtcctgagaggggaggggaggggagggttgccctcctacacctggccccacctgtacctccttcYgt[G/T]agcctttgttctagctagaagggcccctgaattctccaggtaacccctgagagggaaggaaatgccttcccagagatgaaSataaagccagctYaggccc SEP-18-2006
DQ846688 3497 rs29023691 rev BTA_5 141 chr_5 74748808 SCAFFOLD90967_7491 - 1249 22 1040 0.37 0.49 nd 0.27 tcctcattggcatcctgaatcagtaagggggYccgagggagacctcgaagaataccaggYagcctgcctagggcgRggctacaccaggatccgaggtcaY[C/T]ggaggccggatgccRatttctgctcagtcactcagctccacactcagcacccagtgttactcaagagctggtttccRgtttggcaggagcatgtgggcca SEP-18-2006
AY844963 1779 rs17871338 rev BTA_5 165 chr_5 58570153 16075 - 729 6 1368 0.356 nd 0.378 nd ttttttacaagcttatacactgcaattataaatgtcttaaacagactctttgtatgttttaaatcttgtttttccttctgtagatgttaactggtaacca[A/G]tgtacaaaagggttggatctcaccttcaggatatctgaaatttacagtttattgtccgtttttagctcatactctgtatacttctgtaggtacatgtatt SEP-18-2006
DQ647190 3271 rs29013632 rev BTA_6 19 chr_6 - SCAFFOLD106320_3036 - 1214 23 922 0.385 0.484 nd 0.347 WgtgagactcaaggctctgtgattttaaaaaaagcctttagtgattctgttcagtgattctgcaattgRtccagggacRccagtctatgggctccatgtc[A/G]ttggaacatcactaaccctttcgtacttgggtccttcRtatgttcctaactgtttatagctcaactgtcagttaaagactgttaagtgttctaatatgcc SEP-18-2006
DQ789028 4766 rs29017713 fwd BTA_6 45 chr_6 23180091 SCAFFOLD35310_9826 - 1247 13 1061 0.474 0.469 nd 0.471 cagcccccagaagaagcctYgtgtcctgtggtctctgccaggtgccatgtggatttgccttttcaaagcaacacatctggtcatcactcaccaacctgct[C/T]ggctcttcctggaatattttcactgcctttYcacttcactcagatttgagagagttaattatttaatacgtttgcaaagcacattgggttccctagagaa SEP-18-2006
AY849380 2647 - n/a BTA_6 120 chr_6 44935727 IL8 AH2-4 809 11 2353 0.38 nd 0.348 nd cctttttccattgcttctaagaattcctcagtaaagatgccaatgaaacttcaaaacaaatctacttcagtgcctcatgtactgtgtgggtctggtgtag[A/G]gttgtcagataaaatacaggatgtccagttatatttgaatattaagtaaaacaatgaatattttttcagtgtYgcatgtacattgttccatgtaggacat SEP-18-2006
AY849381 773 rs29003287 rev BTA_6 140 chr_6 7208892 33233 - 810 7 1044 0.343 nd 0.352 nd cccYgtgtttttcttctcaacaggtatttgacatattaaatgggaaaccctatgagccagagtttacgtctgatgatttgctggcacaaggtgagctgtg[A/G]gagaaccaggtgccctgagccagtgtcacctccatcctgaccctgaaaggggctgagggaaagccagcgttacccagactgtgctgtgaaaggcaggggc SEP-18-2006
DQ888309 2887 rs29013741 rev BTA_7 10 chr_7 - SCAFFOLD109850_10815 - 1561 28 1299 0.49 nd 0.38 0.481 aggcacaggcaaatctatagaaacagaaagcMgattagtggttcactgcagtttaaacttgaaaatgcctttWaaaaaaatcactcaaaaatMgttgtta[G/T]ttataaaggcacattgaaatctcaYtaaattgaagttatttactgaatacacYgtccctgtgcatgtgtgctcagtaYgtccaactctttgtgagcctgt SEP-22-2006
DQ786758 2739 rs29024430 fwd BTA_7 26 chr_7 14355380 SCAFFOLD41765_2717 - 968 12 1072 0.464 0.328 nd 0.445 gcctccttgctttggccaccaggaaactcagcactgggttttgagatgaactctagtggtttcttgagttgggaatgcagtttttctcctctaatgttat[G/T]gtttgaagttagtcttttattctgtgctcttggccatgtttgaaaaagcatggaggcataaacagtcaaataacaacactcctaggaattctgaccataa SEP-18-2006
DQ650635 6667 rs29012174 rev BTA_7 65 chr_7 36755009 SCAFFOLD121256_6611 - 1184 14 995 0.438 0.396 nd 0.362 cagctctcattttacaactgctttggttccattctctacatgggataatctttagcaatcagaggctaattacacaaagaatttcagggttcagaaacac[C/T]cagttgagtggggaagctcaagttgtcagtatgRgaactgttacaagcggggagaagagggcattcaagcaagaccctggacaccaacgcYgaaccccaa SEP-18-2006
DQ916057 2473 rs29009979 rev BTA_7 106 chr_7 50927133 SCAFFOLD145666_13245 - 1670 12 1280 0.427 0.5 nd 0.446 attttatgttaagSaacaaacttctttcatcaattcacttaaaaaactcagtagaggcattccattaatttagtttaacttagtctagtttaatttctga[A/T]atKttcctcacagttgggttgactgtggaagaaaactatgttctgtcaaactaaaacaaaagtgcatccctttttagatggtcaaagcagtttgattcta SEP-22-2006
DQ786759 4217 rs29026696 rev BTA_7 129 chr_7 - SCAFFOLD235985_4468 - 1242 8 1055 0.469 0.448 nd 0.419 ggattgagtttccagaaatagaattaactgctggaaaacagacacacatacYactgcacaatcacataaaccacacgctcaggagtgaaccgtgccaaag[A/G]aggaggaagacagatttaagcaagaataacaagaataaatgaacattgcatgtggtattgagatctaaaaggtctgaacagttctacatgcagcatctgc SEP-18-2006
DQ916058 6220 rs29016146 fwd BTA_8 3 chr_8 - SCAFFOLD302326_838 - 1342 12 898 0.385 0.495 nd 0.361 cttggttccccgacgagggactgaacccacacccacagcagtggatgcgcacagtcccaaccactggagcaccagggcattacctatcacagaattttaa[A/G]ggaaacggacagcccgcggcttgagaatctattaagagcgccaagtctaaccactgacgtgYttacctaccatgagttcatctRtagtcgctgcaccttc SEP-22-2006
DQ650636 12125 rs29024525 fwd BTA_8 40 chr_8 14357155 SCAFFOLD45297_18349 - 1175 17 978 0.49 0.432 nd 0.372 ggaaccacagagtataatatatgtaaagaaatgtgMctagctatgtgtatgacttataaccagcacctgggtcatggaatggaaaattatcaaagtcttc[C/T]acataSatgactgctatcctgatttttaatagcaggaMattaatttattttgcctcctttttgtactttataggaaaggaatcatagagtatgtactctt SEP-18-2006
AY850194 1369 - n/a BTA_8 68 chr_8 28151929 34178 - 1087 8 1011 0.381 nd 0.406 nd ctccagaagaacaggggcccagcattaggaacctggatttctggcccaaactcatcacactcattgtgtcaatcatagaggaagataagaattcctacac[C/T]ctcgttctgaaccagtaagtatcacctcacttggcYtttctgtttggtggttggtttgtccacctgYctaMcaScctctttctttcctgtctctgtgtgt SEP-18-2006
DQ837644 8988 rs29010468 fwd BTA_8 102 chr_8 - SCAFFOLD155145_9683 - 1385 20 991 0.479 0.453 nd 0.361 atgtcttgcRtgcattatctcctctgcagctgaggcttatgtacaagataggcYgccaaaggctKcctctctttcaggccaaaatcctcaaggcaattRc[A/C]aagccttgatatctgctagaaatatggagcagatacttgaggaaaatagaatagatatttaaagtcaaattgatgcctccaatttctcagcacttgttca SEP-18-2006
DQ674265 3469 rs29011266 fwd BTA_8 122 chr_8 - SCAFFOLD165033_11046 - 1226 17 1335 0.443 0.484 nd 0.479 agctgctactttcagaaacagagcattatgatgctgtatcattcttcccRtaactatgtcYtcacggacaaaagctttaacatgcacggtgScacatgcc[C/T]gaagttagactacttgtgaacagctcagtagctttaaagattcagaataaactatgtatgcttttgctaaaactgaggtgcYtcctaggtagtcgccctg SEP-18-2006
DQ846689 4865 rs29011985 rev BTA_9 52 chr_9 24751784 SCAFFOLD116602_3801 - 1449 11 972 0.479 0.406 nd 0.292 attgtggttagtttctccctggttagtttcttctgacaaagttaatcaactatatKtgtacatatatagagagagctccctcKgagagctcccttMcacc[A/G]cgctccctattcttttgtttttaagtgaataataaggctctgtctctactttagaaacttcatgtgtgtgtgtgtgtgtRtgtgtgtgtgtgtgtRtatg SEP-18-2006
DQ786765 2742 rs29009858 rev BTA_9 106 chr_9 59907400 SCAFFOLD141809_449 - 1147 13 979 0.458 0.328 nd 0.456 tacggtgagagtccaggaggatggttctgacactRagtgggtctcccttaggactcctttcctggaccctttggggtatgtgctggtgagctRgttagcc[G/T]cgMtcccccaggtttttacggaggcccagtgtcccgcagttcgaccataggtcttgccttctgagcccagcRtgttctttacatactcacagtcagtcga SEP-18-2006
DQ786766 586 rs29012070 rev BTA_10 8 chr_10 - SCAFFOLD120193_885 - 1144 23 1056 0.308 0.479 nd 0.448 tatttctccttcactgtctgactgacttcactcagtgtgacactttctaggtccatccaWgttgctgcaaattgctcatttgtggatcctgtgatctatc[A/G]gttccattcctaggtatatcctataggcaaagtYacaggtgaaggtgttctYggccagtaccaggagtagggRgRagtaagggaagatgcctagtgctca SEP-18-2006
DQ786760 3866 - n/a BTA_10 22 chr_10 - BES8_Contig490_773 - 1341 26 1092 0.469 0.49 nd 0.344 acagcagtctcccccgcggtgcgtgMagcctgctgcctgtaggcattgtcttaaggaaccctggagacagccctttccagtggacattcatgaYtggatg[A/C]tgtccccagtctaggctccaggcttgtatccaaggtgcctctggaaagcccaagggcacagtggtcagtgtccacataggccaagtcataaYgcccatcc SEP-18-2006
DQ786761 5584 rs29012840 rev BTA_10 57 chr_10 - SCAFFOLD135062_12754 - 1437 11 999 0.438 0.411 nd 0.438 aagtgaaatattagggaattKgaattagagcatctgtatgaaattaagaatacatataccatagtattttttcccttagcttactgaatatgaagttaaa[C/T]cttataaaaagcacYtaagaaacaaaagaaacttgaaaagggtctagtatttctaataataggctgcttctattacaagttagttatctacgttaaatc SEP-18-2006
DQ984827 3279 rs29012019 fwd BTA_10 81 chr_10 38369314 SCAFFOLD11903_9629 - 858 31 1123 0.474 0.448 nd 0.485 tgctcccaggtcatttgatcttctcctgacaccagagcatttgcatactaaaatacaaatgcaggcactgaaatYRtacaaaaacactacttatcagtac[C/T]ttaagtaaaggcagtgaacatactcatttgaaagaatacagggtacctatggaataatggcaccttcctaaatMtaatgtcattacccatcatacaacta SEP-22-2006
DQ786762 21991 rs29010772 fwd BTA_10 100 chr_10 55743029 SCAFFOLD155430_14295 - 1244 11 1075 0.464 0.443 nd 0.493 cataaccacagccaStcccagctgtaggggtctgtaagtgacagaagcacRtgcaaggtgacctgttacctgggcttcatggtgatgYgcttttctaaca[G/T]aagattcacccattcagcYagtgcttactcattacatacaaatcatctatgccRagtcgtggtgtctttgttttttcacctgcaagatgcagagatgcct SEP-18-2006
DQ984825 4143 rs29012457 rev BTA_10 116 chr_10 65505482 SCAFFOLD126125_3685 - 1164 8 1046 0.417 0.484 nd 0.478 cgctgtcagcgtcggcccccaaagggccactcagagcgcacactcagacgtccccWaccgactccttccttccccatctccatttcgaactaMgagagac[C/T]gagcctttaaaagccattcagagaagaacacttgaatcttSccgaacccgagttaYtWtaaatagaggaaatccaccggaggatagatgttcccagattc SEP-22-2006
DQ837646 3311 rs29012894 rev BTA_11 11 chr_11 285082 SCAFFOLD135323_1575 - 815 15 556 0.359 0.349 nd 0.421 acacttgctgccttttgaccaccacatHgtgacacagcttccaaaYggtctactggggtccctctggccacccctccaatccatctccagtgggtagcca[A/G]aaatcaccctcagatgtacatctaagtcatgtYactctcttccaacggctttcctgtttttaggacaaagaSaaaagcttgYRgcttacaagcKcttaca SEP-18-2006 MAR-08-2007
DQ837645 3205 rs29015870 fwd BTA_11 43 chr_11 18235616 SCAFFOLD296989_1191 - 1448 22 1172 0.417 0.479 nd nd ctcagctgcagctgccgggcagYcgtccagggtgacaggcagaacgcagtgcgcaagggtgtggggacagacaacaggtggcagctcggcagcagtcggc[C/T]gYgggggagatgagcggaggacctcctagcatttgggaagagggggtcctgaccagcaggtgggcYacagcaatgagcaactccagagggaggttctgaa SEP-18-2006
AY851162 2126 - n/a BTA_11 68 chr_11 31559802 IL1B AH8-4 469 7 723 0.353 nd 0.399 nd acattttcgaggtggccaggatataactgacttcagaatggaaaccctctctccctaaagaaagccatacccagggagtccacKtgggctgaataacccc[A/G]aggactggcagaagggaagggaagaatgtagctgcagcctgaacttcactgttgtctKatccatgcccKactgccttccctgMattagtgcttagagatc SEP-18-2006
DQ837643 2710 rs29018818 fwd BTA_11 98 chr_11 47854679 SCAFFOLD70144_44104 - 1113 13 1047 0.447 0.396 nd 0.462 acgttgcaaaacagctctctacttgctgctctgggcttcaaagggatattatgttttaatgcactgctgtataattcatcagccctcacccctcccagtc[A/G]aaattactgatggaaataagcaaacaccccaaatttgctatttccctttcccaatgccaacagtgaggMaatgttcccatgtaaatcaaagctgggtgtg SEP-18-2006
AY851163 350 rs17871661 fwd BTA_11 123 chr_11 83566465 3254 (GFI1B) MBS015-1 607 10 802 0.365 nd 0.406 nd cgcYggcccttggccctggtgagtcagagcccaggctggtccgaggccgcacccgctggcctccctgccccgtgagagggggaggcaggaacatcccatc[C/T]ggaagtagccgctcttccaagtctggaatcaggaggagctcagtaaatgctggttgaatgaatgaatgaatggatggctgcaccatctcttctcacccaR SEP-18-2006
DQ786763 1868 rs29020472 rev BTA_12 15 chr_12 4962225 SCAFFOLD215881_4945 - 1100 23 1020 0.458 0.411 0.441 nd acYgcttgaattSRcYttacctcttgagggggcacRttaagttatcaattatttgcagatgccacRgtcatagaagcttctggcccagagactcaaatgt[A/T]gtttgctaaaacagctaaaataatgtggggactcaggaaaagacaagtctatcRtttgacatagtgaaaaagtaaaaatgtgccttttctgtctgtcagc SEP-18-2006
DQ786764 31091 - n/a BTA_12 34 chr_12 - SCAFFOLD140006_43910 - 1265 20 995 0.406 0.354 nd 0.474 aaatgacatggtcttactggactagcaaagattaataataaataataataaYatgcagggttggcaagcttaggaggaaaccagtcatctcaKatgactc[A/G]gttcaagattaacctgatggaactcttcYgaaaagtagtttggtaatacgtaactacagccttaaataatatgaactcKgtggtcaagtaattctacttt SEP-18-2006
DQ832700 23615 rs29012872 fwd BTA_12 92 chr_12 40386291 SCAFFOLD135238_3808 - 1239 10 929 0.469 0.453 nd 0.472 tcttgaccttcagtgggcatccctaaccttctaaagctgaccttcaaagttccgtttYccccacagcccttcccaggccaaaccaccccaYttgatKgct[A/C]tttctgtagcttctaatcccttaagcaccacttacagatggactcgcttgcacttttaatggtaggtcatttgcacgagttaacctgaccccaacccagc SEP-18-2006
EF026087 4580 rs29011643 fwd BTA_13 1 chr_13 - SCAFFOLD170799_16937 - 1465 28 1056 0.427 0.49 nd 0.495 gtgaYcctcttgaaRggttctgaggcatacagtgttcatattcctttgggttttgccttccacccacctgctctgacagacctttaattttggaYcRctg[C/T]ggttgaagcccgtggatgcacagtccccaaagccagcactaacttgtttgctttggagaggcctgacgaaaataggctgcttttYaaYgcaaatagctca OCT-06-2006
EF034081 2249 rs29009668 fwd BTA_13 35 chr_13 - SCAFFOLD140080_30362 - 1017 5 1179 0.458 0.406 nd 0.374 ttccaccaccttctattcctatccaggctcagttcctgacgctaggactgaggacttctcctccttatgtaagcatcaatcagaaaatgctgggttgaca[A/T]gcactactatctataaaatagatggctggtggaaagctgctgtatagcacagggagctcagctgggtgctttgtgatgacttagttgggtgtggtggagt OCT-06-2006
AY853302 676 - n/a BTA_13 51 chr_13 30179543 PRNPDS11 AH25-1 1039 20 1735 0.353 nd 0.371 nd gacctggtcattggctgttaggccctacatgacctggtcactttctatgtggcttcctgtattccctttgttgtctaatgtcagaaactataactatcta[A/G]ttcacactaggttctctataaattatttgctgaacaaaatatttcttcttttgaaaataagagaaacatagagtttacttcRttagcttctccacatttg SEP-18-2006
AY853303 909 - n/a BTA_13 78 chr_13 54504323 5033 MBS046-1 638 4 717 0.385 nd 0.386 nd tcttgtgaggacctggcgcaagactctccactccacacctgggagtggagagtggattgggaagcctggggaactgtggacctgtgggcaatcccttagc[C/T]tttctgagcctcagtttctccatctgtacaaaaggggcaatcataccMatttcacagtcaggtgaactgtgcagaagcacataagccttattaagagggc SEP-18-2006
DQ846690 55898 - n/a BTA_14 19 chr_14 4908044 BES10_Contig690_1296 - 1175 15 1010 0.391 0.396 nd nd atatgatgtaatcccattgttaaaattatatataccRtattcagaggagaatgtctagtttagaacttaaaaacagcttagttccactgtgatctatacc[C/T]catgccaccttgcagctggcctgcagctccgtcacactgacccctgtgacggcagagccttaccctgctgttggcaggtagtgatggggRtgctgtgtg SEP-18-2006
DQ984826 3202 rs29027559 fwd BTA_14 40 chr_14 12300739 SCAFFOLD25283_5546 - 1228 22 993 0.422 0.474 nd 0.396 atcttgcctYtcctttcacaaagcagacacaatgcctgtctggcctctgtgggttgtagtagcagcagattctaaggttggaaatactgctccagcccca[A/T]tgctaagtgaaccaaaaggctacctacMagctctgaatgtgactgggtgtcatcaggStccctgcagcaggtattggaggtactggcagggggagcagaa SEP-22-2006
DQ846691 2969 rs29019814 rev BTA_14 59 chr_14 e SCAFFOLD20653_10639 - 1268 14 1005 0.422 0.396 nd 0.403 cagttgtgcccaagaagcaaacttaattcataggatgcttcagagatctaaaaaaagagatgaatttcaaggttgtatgctagtttgtgaactgagttca[C/T]tttaRttaaacatcWctatatccgcatgtttcRtggggttctctctcttcctctttacctactctgaaatgaatcRacatgtcatctRtgaataccgtag SEP-18-2006
DQ846692 4078 rs29010281 fwd BTA_14 104 chr_14 - SCAFFOLD15134_29247 - 1268 14 992 0.38 0.411 nd 0.5 tctggaaaatgggaaataagcctgcccttcaggacgcttcagtgcctaagggtaatgaatgtcccatagtcagcactttgtaagcRcccactaacttgca[A/G]ccaaaatgaacatttatctgttggaattcatagtttataKaatattagagRtactttttaggcacaagctatgaacttgttggctcctgacatattcttt SEP-18-2006
EF042090 1584 - n/a BTA_15 23 chr_15 7416986 BES9_Contig405_919 - 1210 13 1034 0.391 0.396 nd 0.365 tccttttcattaaatagcagtaggcaatttgtctgtaatgcatttaagagatacttgtcttcttgcttttggcagcatataaaatcatcttgagaaagac[A/G]atggatgggaaagaagacatcttttcatatttgcagcatattttagattYtagaaacagttgctctttaaaaaggctcaaaactgattttcagcttttta OCT-06-2006
DQ866817 3108 - n/a BTA_15 57 chr_15 - BES7_Contig444_1293 - 1252 8 1271 0.469 0.479 nd 0.323 taatttgtctctggggtttttaaaaagaagtatgtatttatattcagattgatggtccagcatctttaaccctgactaaataggtttgggacaatctact[A/G]aaattcctgtggtggacatatttcctgaaagcctctttgagatcaccactcctagaggctttacatggtaaatcattggctctatggaaatttcatcaaa SEP-18-2006
DQ866818 2260 rs29011701 fwd BTA_15 102 chr_15 50087867 SCAFFOLD171891_21805 - 1167 12 1011 0.453 0.448 nd 0.43 ttcctcaaggtctgaaaaggatgcttctaaYtattgaaRagacatctttgctttctgtgatttcaggtgtcagctcctgagctttagaacatggctgcta[A/C]aagcaatgtgactgaaatcattttcttgggattctcccagaaccagggtgcccagaaggtcatttctgtgctgtttctcctcttgtacgtggccatcctg SEP-18-2006
DQ846693 2619 rs29017621 fwd BTA_16 9 chr_16 - SCAFFOLD349064_338 - 1268 20 1031 0.474 0.474 nd 0.446 cagttacatgctggcgatggWggtggtgaccataatactaagtccagtgagtaaaagaccagggttttcaggctttatgtctgtacagcatttgcctatg[A/G]ttgcctgtttgcagaRctgcccagaagccaagaagctggtctatYaatttggggggaatttatggccacagagagtaaaaStctaacctgaaatattctc SEP-18-2006
AY857620 792 rs17871214 rev BTA_16 19 chr_16 48634907 5089 MBS047-8 588 10 1030 0.414 nd 0.352 nd gagcacaYtacctgccatcaagtgcagatacgcatcaggttgagtgaKtgattgaatgatacatcatgctttaaaaaaaaaacatgaaaattRgcactta[C/G]gctcattctgaaaaacctaaaaaagacaagaagaaatttgcttatattcttagcagtattcttgctgctatagattcagaactgattgttggggttgagc SEP-18-2006
DQ846694 684 rs29015842 fwd BTA_16 36 chr_16 - SCAFFOLD296643_2746 - 1280 11 1079 0.469 0.5 nd 0.479 taaagataagctgagggaggggagctgtggggtgcatgctcagctcatggaaattcttctgattggttggtggtaagctaattgggagtcaacatcatta[A/C]tctttYggttcccaactggcttggtttctatgtgcttatgagcaaaatatagctaacttcatccatttgcaggggatttcattagctgcagaaaaactca SEP-18-2006
DQ846695 2451 - n/a BTA_16 92 chr_16 56658699 BES3_Contig484_1938 - 1211 7 990 0.396 0.479 nd 0.453 ctggtacaatcagtcccattgagtgatgagtcatgtagggtgcttgttcttagtaaatccaaatacaaacagacccatggggctttctgctatgtgctca[C/T]gcacagYgctgaccagaaaactgattttacaagactatcagttcctaatggatatgtcataatgtcttggaagagcatattcaggaagtttacagcgact SEP-18-2006
DQ888310 3297 rs29012422 fwd BTA_17 0 chr_17 - SCAFFOLD125799_2719 - 1174 12 979 0.401 0.328 nd 0.441 tcagcagttgggtattggtttaaatttgcttctctacccaggcagggacttagaatggactccatagctgatacggccattggttgggagctaaatcaga[A/C]aatgcttccagctgagctctctggccagacaaggtcaccagtttggctctgcagatagcctgagctgctgcctgggatctctactcagacagcactgtaa SEP-22-2006
DQ381152 37164 rs29002408 fwd BTA_17 26 chr_17 11723091 39037 - 359 5 945 0.347 nd 0.363 nd ttaatagttgatgaaacagttgacttaaaaacYatgctctctcaaagcacacatgtatatttatgtatatacatacacacgcatatattctttggttttc[A/T]tttcacatagactgaatgctttaaaattctttaaacctgcccctttcctcagatatgatgatatatttattgttgttgttcagttgctcagtcatgtcYg SEP-18-2006 SEP-22-2006
AY858890 1978 rs29002256 rev BTA_17 49 chr_17 18876699 39083 - 1087 4 1039 0.358 nd 0.381 nd cctaacataaattcctagaagttgaagttctaagtgaaaatatattcccaattaacatactctagaatggttgtaaagtttacccttttactaatagcat[C/G]tgcttttctacgtccttaccaacactggttattataaatcttttctttgatagattgagaaScaaaaaatattattttaatgtcattattaaggtcatca SEP-18-2006 SEP-22-2006
AY860426 6236 - n/a BTA_17 80 chr_17 30341354 2121 MBS018-1 560 1 686 0.338 nd 0.396 nd aagaggtatgcttgttctcgcttgtgcagaaaacattgttccagattcaatcgactgggttcatgtcccctcacatagtttttaaggttatttatttaaa[G/T]gtctaatgtattttattgtaacagacattgttttgccaacattgcctatttcagtggcacttcacaatctagtttaaaaagaaaaataaaacattttaaa SEP-18-2006 SEP-22-2006
EF028073 12238 rs29014953 fwd BTA_18 1 chr_18 648245 SCAFFOLD186240_12002 - 1660 27 1152 0.484 0.443 nd 0.296 ttgagYagagttcactatattaaatctttgctgccaagtacaagatgataaggattgtatttaaggttgtctgataagacattgacagRggcagggtaga[C/T]actaattaatgcgaggcaacttgattattgacaggcaggacctggtattgtgggcatcaagtcggccatctggtctgtacttccKgcctccatctctggt OCT-06-2006
AY863214 647 rs17871744 fwd BTA_18 59 chr_18 36892892 3190 MBS033-1 798 3 746 0.347 nd 0.367 nd cccgaagagagggggcgggactagagcgcctgatggaagagggtctgggggcctgggttcttgggtccagaggatgaagtggcaggggacgccgattctt[C/T]ggtcccaagagaggaagggcctgagtcttgctgaaggaggagactgggacctcaatttctgggtcccaaaagagaaatgttgcaggggctggactcctgg SEP-18-2006
AY914316 2023 rs17871403 fwd BTA_18 66 chr_18 44571637 3144 MBS021-1 646 8 793 0.337 nd 0.396 nd ggtccatttcaccagtgctgtcttccactttctactgcgattRgtcacttcttcatccatgggagggagaggagagctcttctcagattgcctgatttcc[G/T]attcctttcatcctcagccggctcttcccagacaaggagagcatgcttgatgcggctttcaccttggcagctgagatttccagcaagagccccgtggcRg SEP-18-2006
DQ888311 1975 rs29017313 rev BTA_19 9 chr_19 4152861 SCAFFOLD321751_22824 - 1219 31 1103 0.365 0.37 nd 0.191 ctgagatctagcgctgcRcgcattgccattcatcagaggtctgtggcagcagcccgattMtaaacagagcagcttgtctttaggatggccagctctccag[A/C]ggagccccctggccttcagcagtggggtgagcaccRcctcctcttaacctctcttagctcagccgattcagccgagcgcagagaacaggcccaagtgtgc SEP-22-2006
EF026084 5508 rs29025380 fwd BTA_19 41 chr_19 8957914 SCAFFOLD276848_2797 - 1055 4 935 0.469 0.474 nd 0.411 agaatccttaaatYtatggcaagtctcatttattggtcagcttattaaaaaaaaaaatggattctagaacaactggctcatcaacagctattaattatta[C/T]tgaatttgccctgacaggctagaactggcagtggtgctagacaaagaaaacaaaagatgaagtccttgcttcccctgtgtgttcacttgacaagaaagaa OCT-06-2006
DQ888312 15284 rs29015945 fwd BTA_19 68 chr_19 28193121 SCAFFOLD300078_3267 - 1180 10 1009 0.375 0.411 nd 0.43 tttggaaccagccttgagagggctggggaaggcaggggtgaggtttaagggaatatttgcacctgtctctggatcacagaagaggctgagggtgtgtggc[A/G]tagagaattggccctgaggcctttctcagaattccctgtacagttattcaaatactccttttgctcaagtttcctggggatgcctaggctgtggggStga SEP-22-2006
AY916666 3315 - n/a BTA_19 78 chr_19 37892328 5067 MBS054-7 624 9 859 0.391 nd 0.354 nd ggtggcagaaagggtMccgcgggtctcccattRgtcttcccctgagtccctgcccagccgggactgcctggatctgagaggtgggacaaggaggtggctt[A/G]gccgcaggtcaccggctcgcaagtctgagtctctgggaaaggcaagtgtcccgttgaMtKaggagacccgcgggtctcccctcaggtgcagacgcagctg SEP-18-2006
EF164803 1200 rs29011141 fwd BTA_19 103 chr_19 48513521 SCAFFOLD161280_6022 - 423 20 815 0.49 0.495 nd 0.398 ggagagcttcagcaaagggtagatcccggccaggggtggtgggcagggagggggcccttggacgctttctcatgttattccgtggggttatctctgagac[A/G]gtgtgaatgagagcacggtcacagtgccctgaccccgaccctgggccacggcccttcctgcggcagcatgacYttggctgaggtgcttggttMccctctg DEC-07-2008
DQ984828 8696 rs29010004 rev BTA_20 1 chr_20 343146 SCAFFOLD145774_16171 - 1182 7 1018 0.458 0.391 nd 0.488 tgtgatctgggtgggactctttaagcaagtcagaattttcYcatttttgctaatgaaaaaataaagtggagaatgaatgcactgtaaaagaaatgtaatt[A/G]tatgtacccactctctccttctctgcccccttagttttttctgctcccccatcccctgctgcctctcctgaatcctgttctccaaaggaaagtcccattt SEP-22-2006
DQ888313 10759 - n/a BTA_20 23 chr_20 9967640 BES1_Contig298_838 - 1148 10 1101 0.484 0.432 nd 0.458 ggaagcaaaacaggtgctactcacttgaggcaacattttcctcatttaactgcatcgttaaactggctcctggcagagttcgggtttagtcaccatgcca[C/T]gtaaatggtgggtgagctccagaagcagattaaaaagttgggttccRttttttttctccctgaaatactcaccagaaatacatcagtaggaacctgagRg SEP-22-2006
DQ990835 3922 rs29012811 rev BTA_20 43 chr_20 23579052 SCAFFOLD135010_59089 - 1134 22 1031 0.49 0.401 nd 0.419 ttctggtcttaattatggggttggagaagtgaYgtgtgttttataagattagcttttataccagctactgtaactggcagggctctagctctttcagaag[C/G]agcctggcagctgggaagaaatgactttatgtgatggggcaaggagtcattggYStgcttgggaaaaggctttYacagaaacctctttttactRtgtggt SEP-22-2006
AY919868 1449 rs29002211 fwd BTA_20 60 chr_20 29575922 40619 - 1195 11 1008 0.336 nd 0.374 nd tactgtaagagggagcagtatataacttagaccaaatccttgcaagatctgaaggaattgaaaatgtctaccatttatatgaaaagtattgtttaaactg[A/G]aaggatacattttttaacctgaaaagctttcagacagttaatcgctaattgtagaagttctaccactgccagcaaggagttgtctggtgttttgtggtgt SEP-18-2006 SEP-22-2006
DQ995976 4623 - n/a BTA_21 12 chr_21 - BES3_Contig284_789 - 1251 12 1108 0.469 0.396 nd 0.318 tcatcagcttcatgatctMatctaattggatgttttgagattaaaatattggctccttaaatagccatgcacctgatgggttgtttgtagcatccattac[C/T]actgaccaaatgatttgttgtttttaattaaatccagcaacagtttattgccccttttgcactaatcttgaatactgcagtgtttttggagatgatgaat SEP-22-2006
EF093511 2518 rs29012316 fwd BTA_21 47 chr_21 22039817 SCAFFOLD125212_13312 - 1298 16 1007 0.495 0.479 nd 0.454 cccacatcctctgcattggaaggcaaattcttaaccactggacYaYcagggaagtcccttgtgctcatctttatttggttaggaaactctcctccgtcag[G/T]tgctggtgaatgcagctcttcctataaccagccccaaggaaaggggcgtggtctacttctgatgKggagctctggttttgttttgtggttgtggggagac NOV-13-2006
EF026085 5085 rs29021607 fwd BTA_21 80 chr_21 - SCAFFOLD255533_15525 - 515 10 1010 0.495 0.365 nd 0.492 tagagtagtttgccatttctttctccagagKatcttcctRacccagggatcaaRccctagtctgctgcagattctttacttgctgagScattggagaaga[A/C]ctttagttcaattgaattccaagccctgcccaatgccaagtcatgacatgggctagagacaaggcctctgagacttggtttcctcaaatatagcacaagt OCT-06-2006
DQ916059 5599 rs29009907 rev BTA_18 32 chr_22 3767051 SCAFFOLD145048_23190 - 1005 14 1382 0.458 nd 0.432 0.318 tcatttgtgttgttctaaaaccacttgcaaaaagtcaatcaaacaccaatatgacattcctccacaYacatRttgctttcctggccacaaagcagtccac[C/T]gttagagcctttgttttgctttgtttcatctattcattaacRatcatatgtggggcacctactagtgcccaggcaaagttctgagtatgtgggaaaatgg SEP-22-2006
DQ990832 9611 rs29015065 rev BTA_22 14 chr_22 - SCAFFOLD190049_10845 - 1197 14 972 0.464 nd 0.438 0.5 caaagaatgtgagtttttgatccaataatgtaaaaacgtaccaagaaccactgtgataggagtagcccaacactggggatWgaggagagctccagattcc[A/G]ctctctggccaggaRcaagtcttgttccctcttttcttaaaaaaattatttatttttaattggaggataattgctttacttgttccctcttggggcatca SEP-22-2006
EF093509 5510 rs29015170 fwd BTA_22 37 chr_22 - SCAFFOLD190836_5512 - 882 12 984 0.401 0.469 nd 0.312 aaacaaatgcaatgcttgattatcaaattttctaatttgcctgtgtgattggccaaaaggtattacattcattctttcacaaacaaacaatactaaaatc[A/T]attatcttctctcatgtggttttctatttattcattcatttatttgctaaggacaccaYgatcagYcctttacttggtgtttgctttctatctctgtagt NOV-13-2006
EF093510 4071 rs29010035 fwd BTA_22 61 chr_22 34664316 SCAFFOLD146363_8633 - 1235 10 959 0.479 0.495 nd 0.393 cacttgaggcaaaatagaacttctttgttcaaaggaaatagactttttaaagtcttgtaaaatagacccacaatgctttttgggactcaWataactctga[A/C]ccaaaacgttttaataaattaaacataagtggattagaaacagacaggttgtcttttcatgaaatacacccaggccagactcagaaggagaagcacagag NOV-13-2006
EF034082 9261 rs29013532 fwd BTA_22 80 chr_22 - SCAFFOLD105204_16908 - 1286 20 1113 0.443 0.464 nd 0.481 atctagagtcagttgttgaaagcaYctttcaggccagcttcgcagctatcatagtatgttcttttcccttataaacaactttgttggtggtatattttac[A/G]KatcctgagatttatttattgcaggaatRtacttcagtgatttttagtaaatttacatagtgatacaaccatcatcattaatcaattttagaacattttc OCT-06-2006
AY929334 932 - n/a BTA_23 20 chr_23 5626337 3463 MBS025-1 632 10 721 0.389 nd 0.353 nd ccaggcYcccagcaagcagaggaggtccagagaagcctctgccccacccctcaggcctctgttggctccctggccccactctcaaaatctgagacttgta[C/T]tcaacccttttctttcccaggaggttctagatctcctcagattccttcaacagcctcttcctgtaggaatgacccctcctgcctggcagatacggcaMcY SEP-18-2006
AY937242 531 rs17872223 fwd BTA_23 49 chr_23 23465314 5279 MBS035-1 669 11 872 0.382 nd 0.397 nd ttcaaacatttattgaacacttactatatacttggcattgttctaggttctgtgaatacagttRtgaacaaaacagagcaaaaatccttgccttcatggg[A/G]tagggaatggggagacagacaatatacataataaataactaaatgtattttttgtgttaagaggtaataaatacagtggaaaaaaaMcaaaatagggcaa SEP-18-2006
EF089234 3490 rs29020870 fwd BTA_23 85 chr_23 41489296 SCAFFOLD225086_14961 - 1803 5 1037 0.495 0.406 nd 0.335 gagtgccaggacaatgactctagtgt{/g}tgacagccggagccagacaggcttcccaggaggcccccgtgtcagatggagggcctgagggacagcaatgaag[A/T]gtcaaggctgcaggggaagggaggtgggggagggccacgttaggagtgatggataacagttagaggggtccagatgtttttattactttaaattttgctt NOV-13-2006
DQ995977 3297 rs29020834 rev BTA_24 0 chr_24 46072 SCAFFOLD222971_1856 - 1256 13 945 0.401 0.479 nd 0.262 gtggtgMgaggagStgaccacgtgggtgccagcccagcaggtacaagggYgaggctgccaggtgtcacggcgaggggctgagactctggtgccacggggt[C/T]gggaggaaggtactgggcctcagggcaggcacacctgggctaccttttcatgaaacgaatagaagcgtaaggagctcaatcaccRggagtcaccRagggc SEP-22-2006
DQ990833 4935 rs29010147 rev BTA_24 29 chr_24 - SCAFFOLD150215_5759 - 1204 8 944 0.406 0.422 nd 0.398 gtttctttataaatttgcatWacatgaataatgccttgaaaaaggtgacctcctctggcaaccctgtataaggccactattcttaatcactctcttctgg[A/G]tatccaagttcacagcctttaaatgacaaaaagtatacaggttttccacagctatgtcagaatctgttctgggcccaWtaagaaaagagtgagtatttgg SEP-22-2006
AY939849 2486 rs17870274 fwd BTA_24 64 chr_24 41459715 3635 MBS028-1 649 8 756 0.358 nd 0.399 nd gStgccttcatactttctacccacctaaatgagacattccttttatgtctagccctcactcccagtgtaaacctgttgtgtttccctgtattttcctgca[A/G]tgttgtcacagaggaagtggggtagtgtagttctgccttgatcacgctKtctctRtcttagctgttRtttaaaattttattgtcttaaaaatttttttct SEP-18-2006
EF034083 26377 rs29018286 fwd BTA_25 5 chr_25 3919483 SCAFFOLD60020_10226 - 1155 13 1047 0.391 0.359 nd 0.29 ccgatagggcYgtggggaagYgctgggtgtggcgataagggacagaccaggcggaggtttggagtcttgttttctccccatagaacttggcacattttgc[G/T]tgaagattgactatagaatgggaggtgctggccagcttggcagttgtcagggtgtggctgcgcctcggtgtgcccctgccgcacgtgggttcattgaagg OCT-06-2006
AY941204 5159 rs17872131 fwd BTA_25 48 chr_25 16342230 5013 MBS040-1 1914 16 660 0.362 nd 0.393 nd cataaagtttgggagtggagaatcagttgacccttaaagacacttgtatgtatttcagaagttttctcatgccaagctaagagcagtttcacgtagtata[C/T]ttcagggtcaggaaggcYgcccataaagggcattgtttgtgatcctttgaggacgttgaggtgctgttaatggtRttttctttctccctctctgatttac SEP-18-2006
AY942198 1296 rs29003010 fwd BTA_25 66 chr_25 - 39119 - 2026 9 899 0.385 nd 0.374 nd caagtcacagcatcttcctgggttagcgagcagggtcgggggtggggagaggattccctccaccctcccccaactcactttccctcaaagtgaaggcgac[C/T]gcaaggctgaggacacaggctcatcaccagggcRctggcYccactgagtgaagatggaaagggggctggcggggMtgcagagagggtYggagacgccctc SEP-18-2006
DQ990834 2934 rs29013727 fwd BTA_26 8 chr_26 - SCAFFOLD109398_2406 - 1073 4 913 0.49 0.318 nd 0.489 attcctgtgttgaagctccaccctccccatctccaagcatgtgagtgtgtttcgagacagggttcataagaatgtaattaagtttaaacggggttgtgaa[A/G]gtggggctctgatgtgatagaatttgttgccttgtggaaagagatgcaagaaaactctctMctctctctcYgtctgccatgtgagcaaacagagagaagg SEP-22-2006
AY943841 2224 rs17871566 fwd BTA_26 25 chr_26 - 12063 - 2113 7 1064 0.334 nd 0.386 nd ccatcgatatttttaagtgcttgtttggtttttcctctcttcagatgatcaggacagccaaggaaactctagagggcctaaactccaaatcttctgtccc[A/G]agtcaagtgtctttgtgagaaScaggccacaaggaacaatatgtttcattctagagtcttttattaattgattgtctttctccagacttattaatagctg SEP-18-2006
EF034086 16490 - n/a BTA_26 66 chr_26 - BES9_Contig272_944 - 1249 5 1075 0.453 0.484 nd 0.365 cttggcatctggcctaaactcactgctacctgaaagagtgccaacctgttcagcacatttgaatttgcaaataatctcttatttactctcagagtatcca[C/T]gaagctgaagcttgtgatgggtttttattatgtggtaataagtactgttggggaagatctatctttgcaaagcccaattagtgtatttatttattaggct OCT-06-2006
EF150946 10799 rs29023666 fwd BTA_26 39 chr_26 5761477 SCAFFOLD90532_852 - 1234 18 1042 0.427 0.354 nd 0.419 aaggatggctttcttcagcctcYattcactgcacctcatctgatggcagaccccagccRtatggccacScacacttctctctctgctttcccaccaccgc[A/G]tggttattgccacttcctgccttttttcttggtgcccttctggaacaccgtctctattcctctMtgtccaaattccagtcaaacttcatatccctctacc DEC-07-2007
EF093512 5184 rs29013546 fwd BTA_27 26 chr_27 9068206 SCAFFOLD105280_12735 - 1056 24 1185 0.495 0.365 nd 0.49 gagaaaaagggacaYtgtagtccRgttttctaatctttgtgtttcttgtgtttctttgcttatagctggatgttgcaactttggcaaagattagatcaag[C/G]ttgttgtaaaaagatcaaggttgttaataaaaacaacccagtcccaggatcatggaatttcagacYagaaagaRaatacttgaagacgtatctattttgg NOV-13-2006
EF034084 5273 rs29016185 fwd BTA_27 45 chr_27 14693599 SCAFFOLD303739_1450 - 1260 13 920 0.448 0.484 nd 0.478 tgaattgatgctataataatagtaMtttctcctctactttcttcttcatgagaaatcagcccacatatcatgcaattcacactcacatatatcagttgaa[C/G]gaStgtgagaaatcagaaatcatatWatttacagtgtttaaatacattacacagcaggtacttcaataYcctggttgtagccttctggtaactagttcat OCT-06-2006
EF141102 9440 rs29015783 fwd BTA_27 60 chr_27 - SCAFFOLD295848_7080 - 854 9 989 0.453 0.5 nd 0.473 ctagatcgactcagatagagaatcagcatcaaggtaagtgggaatagcttgcaatttatttttttgtcctttttcattttgtaaaatttccagctcagaa[A/G]tccctcagtgttttgattattctcctctggatatgtaccagtttgatagtctttttaaaagagggttcctagaaaaMaaacactacgcttaagagRgaaS DEC-07-2006
EF034085 5409 rs29025677 rev BTA_28 3 chr_28 e SCAFFOLD282541_2701 - 1248 18 889 0.453 0.474 nd 0.409 atgcctgtttcatggaccaagagaagtccgcacatcaaataatcttagaaacagcctSccaggcagatggttttaacacacggtgcagaatgtagactca[A/G]taatgccagaatagccacgtgattcatataaaacccagcactacagtctatattatctttcaaagagaagcaattgtgttcagcatccaaatgtagaaaa OCT-06-2006
EF034087 4853 - n/a BTA_28 32 chr_28 11801138 SCAFFOLD316873_553 - 1185 13 1001 0.417 0.453 nd 0.473 tacttgttctgggaagctgtctcccccttccactgccattctctgtggccaagtatgaaacctgatcactcaattagttaacactctggacacagcattg[C/T]gtctaaaaatacccgccttgggRaatgtaaaggtttcccctgactcctagtaaggaggcccaaactggtcagaatgtccctaagtattgaaacaaggggt OCT-06-2006
EF026086 13002 rs29013660 fwd BTA_28 49 chr_28 27810940 SCAFFOLD106623_11509 - 1097 15 718 0.469 0.453 nd 0.472 cccttcctgggaggatggaatccctctcaagcttStcatctctttcttttcatccttaccatagctaggaaaggactcataggcccgcctggataatcta[C/T]agtatgttccccatStYagggtttgtagccttgatcacatctgcaaaYtcctttgtcgtttagggMaacatagtcacagattctgggggtcaggatgctg OCT-06-2006
EF042091 2189 rs29014974 fwd BTA_28 62 chr_28 34085668 SCAFFOLD186736_5402 - 1356 11 1054 0.453 0.37 nd 0.459 actcagtgatagttctgRgactcagattaagtcctcagtctcctYctttatcacagcttttctccYatgatgaagcaataaggcactgatgaattgtggt[A/G]aagggctgggctcccaaaagtttggaggtgatgagtttacctttaagcaccaaggaactaagagcacagctcctcagcctccccagagatttgtttcttt OCT-06-2006
AY856094 2194 rs17871190 fwd BTA_29 13 chr_29 5519266 13809 - 1363 21 925 0.38 nd 0.347 nd catcataggtaggaggagggggYggcccactgctcagcccagctaattctcttgacttgcaggcggagactgaggctcaacaagggggcttcagcaaccc[A/G]tggagatgcagctctttcccctcacatccaattcagtgcttttattgagttattgacttttattgagttattgctgcatgtgaaccatagaaYggaggca SEP-18-2006
EF034080 5475 rs29024749 rev BTA_29 40 chr_29 - SCAFFOLD50303_4748 - 1096 14 1280 0.438 0.458 nd 0.409 ttccacaagtcctgattgaaccatgaagtcttgaacaagtatatcacacaactcctagaagccaacaccacggtcacatgatcctggtggccaatatggc[A/G]gtgcttctacactatagaatggaatacgtattaatagctYttacattattggcttcattttaccttcaggatgttactggaagttttatttttgatacaa OCT-06-2006
DQ404153 1051 - n/a BTA_29 63 chr_29 30589631 11629 (bRSJW538) - 925 15 1112 0.337 nd 0.347 nd gaatcctattaaaatcagcagttctaacgaatttctgagatgggtatagggaNggtagtgtttggccagttttcctgcagttctctcctgtctggctcac[C/T]gagYcctgactgcttggccacatggtcctcttaatggggctccttgtttgcaggtcttctcagaaggcactgggctaactctctgcttttcccccgtgca SEP-18-2006


a)The chromosome position was obtained via BLAST search of chromosomal sequence available
from Genome Build 2.1 (ftp://ftp.ncbi.nih.gov/genomes/Bos_taurus/Assembled_chromosomes)
In order to be considered, the BLAST high scoring pair (hsp) alignment must have included
the target polymorphism, have spanned 90% of the provided context sequence, and finally
the alignments must have been at least 95% identical. The chromosome nucleotide which
corresponded to the polymorphic site in target context was determined, and its position
was recorded.

b) The cM distances were derived from the composite bovine linkage map; January 27, 2006 build, Snelling et al. 2006

c) Not available

d) Not determined

e) The linkage and BLAST mapping results are in conflict. However, a substantial amount of
data support the current linkage map position.

f) The SNP intended for DNA-based traceback of U.S. and Canadian beef and dairy cattle is
indicated within square brackets. SNPs flanking this target SNP are indicated with the one
letter IUB code: Y=c/t; R=a/g; M=a/c; K=g/t; S=c/g; W=a/t; H=a/c/t; B=c/g/t; V=a/c/g;
D=a/g/t; N=a/c/g/t. Insertion/deletion and repeat polymorphisms are indicated within curly
brackets.

g) Orientation of corresponding dbSNP entry relative to target SNP and flanking sequnce

Change Log
9/22/06
18 new polymorphism records added as well as the orientation (fwd or rev)
for the context sequence relative to its corresponding dbSNP record.

Added chr position for SNP corresponding to accession AY919868, position 1449.
Added chr position for SNP corresponding to accession DQ381152, position 37164.
Added chr position for SNP corresponding to accession AY858890, position 1978.
Added chr position for SNP corresponding to accession AY860426, position 6236.

10/7/06
15 new polymorphism records added

11/13/06
5 new polymorphism records added

12/7/06
3 new polymorphism records added

1/3/07
Added three new columns:
Number of traces at NCBI
SNPs in STSs
STS coverage (bp)

1/28/07
Corrected the genomic region identifier for SNP corresponding to accession DQ647187, position 2869

3/8/07
Corrected the alleles for SNP DQ837646, position 3311 from A/C to A/G

8/9/07
Removed following record:
AY773474 1589 (c)- n/a BTA_1 51 chr_1 - DVEPC18 - 1192 11 925 0.408 nd 0.355 nd ttaaggtcYcaacattagaagtagccccctaaaacttttcaattcaatgcttatagggttgtcaattaagatgattcattttgatatttggcaaaactaa[A/T]acaattatgWaaagtttaaaaataaaataaaattaaacaaaaaaagatgagaaatttgggtgagaaaattgaagctRtaactattcctgatattcagata

The parentage SNP in DVEPC18 was dismissed from the group because it was
present in a 61 bp bovine repetitive element (L1_BT):
gattcattttgatatttggcaaaactaa[A/T]acaattatgwaaagtttaaaaataaaataaaa. This
repeat region was missed in previous automated screens for repetitive
bovine DNAs.

3/14/09

Corrected a typo for the indicated "parentage SNP" for SNP in GenBank file DQ786764 (BTA12 34 cM), from this: "catctca[G/T]atgactcRgttca"